Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
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Jun 6, 2025 - Jupyter Notebook
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phenomics
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phenotyping pointcloud 3d-segmentation phenomics point-cloud-segmentation plant-segmentation plant-phenomics
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Jun 6, 2021 - MATLAB
An interactive corn plant point cloud segmentation and annotation software (version 2.0)
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Jul 4, 2021 - MATLAB
phenol: Phenotype ontology library
java genomics ontologies phenotypes monarchinitiative phenomics human-phenotype-ontology mammalian-phenotype-ontology
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Dec 5, 2025 - Java
Internationalisation of the HPO content
language translation semantic-web ontology phenotyping phenotypes hpo hpo-translations phenomics phenotype-ontologies obofoundry
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Feb 27, 2023
A phenotyping pipeline for Python
computer-vision evolution image-processing phenotyping image-analysis ecology phenomics biology-images
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Oct 20, 2025 - Python
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May 20, 2025 - Vue
A Python package for AI-based comprehensive analysis of sarcomere structure and function in cardiomyocytes
python cardiac phenomics bioimage-analysis cardiovascular-disease cardiomyocytes contractility sarcomeres
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Nov 30, 2025 - Python
Coordination of Data Products and Standards for TERRA reference data
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Feb 1, 2021 - R
Standardise and share computable disease definitions
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Jun 15, 2025 - JavaScript
Computation of root phenes from 3D point clouds.
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Apr 30, 2025 - Python
HPO archive of the ontology and annotations
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Mar 9, 2017
Modular, Scalable Phenomic Data Processing Pipelines
python pipeline hpc distributed-computing plant phenotyping lettuce phenomics sorghum workqueue plant-phenotyping makeflow
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Dec 8, 2025 - Python
Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms
semantics semantic-web ontology phenotyping similarity-measures phenotype ontologies phenotypes phenomics phenotype-ontologies
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Oct 4, 2017
Pipeline for segmenting faba bean seed images and extracting shape, size, and color features to CSV using SAM2.1, OpenCV, and Scikit-Image. --- Pipeline pour segmenter des images de graines de feverole et extraire forme, taille et couleur dans un CSV avec SAM2.1, OpenCV et Scikit-Image.
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Feb 18, 2026 - Jupyter Notebook
Website for the Phenomics and Machine Learning Team
berlin website phenotyping phenotypes phenomic hpo hpo-similarity hpo-translations phenomics phenotype-ontologies
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Jan 28, 2021 - HTML
Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)
ontology phenotyping phenotype phenotypes hpo zebrafish phenomics phenotype-ontologies zebrafish-phenotypes
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Mar 13, 2018 - Java
Python-based image analysis pipeline to automate the evaluation of pork chops using computer vision and deep learning techniques [EN] / [FR] Pipeline d'analyse d'image base sur Python utilisant des techniques de vision par ordinateur et d'apprentissage profond pour automatiser l'evaluation des cotelettes de longe de porc centrales
computer-vision deep-learning image-segmentation image-analysis phenomics meat-quality yolov11 pork-industry
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Mar 5, 2026 - Python
This is a public repository for relevant code from the publication of the same name.
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Apr 30, 2024
my snippets and notes for compact plants phenomics center at WSU
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Nov 9, 2020
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