Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction
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Apr 8, 2025 - R
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genomic-selection
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A high-performance, ALL-in-ONE suite for quantitative genetics that unifies genome-wide association studies (GWAS) and genomic selection (GS).
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Mar 10, 2026 - Python
Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]
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Aug 6, 2023 - R
easyPheno: a model agnostic phenotype prediction framework
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Nov 24, 2025 - Python
2024 BreedWheat Genomic Selection pipeline
r genetics cross-validation statistical-models genomic-selection quantitative-analysis cran-r genomic-prediction genomics-data breeding-data
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Jan 3, 2024 - R
Training set determination for genomic selection.
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Oct 5, 2023 - R
R package wrapping the GS3 program for genomic selection (http://genoweb.toulouse.inra.fr/~alegarra/).
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Jan 11, 2019 - R
Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids
bioinformatics gwas evolution population-genetics families genomic-selection polyploid quantitative-genetics allele-frequencies heterozygosity genomic-prediction pool-sequencing site-frequency-spectrum pool-seq-data
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Aug 11, 2025 - Rust
Robust optimal contirbution selection problems for genetics with Python
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Mar 25, 2025 - Python
This website is a project for analysis of the Genomic Selection for Drought Tolerance Using Genome Wide GBS and/or DART in Cassava by EMBRAPA Mandioca.
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Oct 7, 2025 - R
Reproducible documentation: Wolfe et al. Genomic mating in outbred species: predicting cross usefulness with additive and total genetic covariance matrices
cassava genomic-selection quantitative-genomics non-additive-effects genomic-mate-selection genomic-variance-prediction
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May 10, 2021 - R
A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species
machine-learning deep-neural-networks blup genomic-selection phenotype-prediction plant-phenotyping arabidopsis-thaliana
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Oct 26, 2022 - Jupyter Notebook
Ensemble learning for integrative prediction of genetic values with genomic variants.
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Mar 27, 2024 - R
This is a public repository for relevant code from the publication of the same name.
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Apr 30, 2024
A graphical software for forest genomic selection breeding
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May 24, 2025 - Python
This project documents informatics and genomic prediction to support the National Root Crop Research Institute 2021 cassava genomic selection breeding program.
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May 5, 2021 - R
Implementations of Critical Line Algorithm in GNU Octave
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Oct 26, 2024 - MATLAB
O objetivo do presente projeto e propor e avaliar o uso da regularizacao no desempenho de RNAs em modelos de predicao genomica (GP). Tal estudo visa melhorar a predicao de valores geneticos genomicos (GEBV), evitando o chamado o problema de 'overfitting', e estimacao de parametros geneticos. Para isso, dados simulados e reais serao utilizados.
machine-learning bioinformatics deep-learning computational-biology neural-networks artificial-neural-networks regularization genomic-selection quantitative-genetics overfitting plant-breeding animal-breeding genomic-prediction gebv
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Jun 1, 2023 - R
Shiny app for playing with breeding strategy choices using realistic genotypes
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Nov 22, 2017 - R
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