A Deep Learning Python Toolkit for Healthcare Applications.
data-mining deep-learning healthcare preprocessing electronic-health-record clinical-research clinical-data electronic-medical-record medical-code
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Mar 7, 2026 - Python
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clinical-data
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Python suite to construct benchmark machine learning datasets from the MIMIC-III clinical database.
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Apr 16, 2023 - Python
Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.
java cds fhir clinical-trials cql hl7 clinical-research cqm clinical-data clinical-quality-language fhir-path clinical-decision-support clinical-quality-measurement dqm clinical-reasoning ecqm
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Mar 6, 2026 - Kotlin
Chronic Disease Prediction Using Medical Notes
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Sep 26, 2019 - Python
Open platform to manage and share standardized clinical data, designed by @ppazos at CaboLabs Health Informatics.
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Mar 13, 2023 - Groovy
Code for "Generalizable deep learning model for early Alzheimer's disease detection from structural MRIs"
deep-learning artificial-intelligence mri medical-imaging convolutional-neural-networks brain-mri dementia clinical-data alzheimer-disease mild-cognitive-impairment
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Oct 20, 2022 - Jupyter Notebook
Machine reading comprehension on clinical case reports
natural-language-processing neural-networks question-answering reading-comprehension clinical-data machine-reading medical-dataset
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Aug 28, 2025 - Python
benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.
benchmark machine-learning deep-learning dataset clinical-trials dataset-generation drug-design life-sciences clinical-research clinical-data benchmark-datasets graph-neural-networks drug-development therapeutics clinical-research-data-warehouse
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Jun 24, 2025 - Python
PANDORA
data-science machine-learning data-mining bioinformatics clustering systems-biology data-visualization drug-discovery data-integration microbiome transcriptomics predictive-analytics pandora tsne umap biomarkers genomic-data-analysis clinical-data unsupervised-machine-learning
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Apr 4, 2025 - Vue
Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109
benchmark machine-learning framework deep-learning time-series icu ehr mimic-iii eicu-crd clinical-data patient-monitoring mimic-iv hirid-dataset amsterdamumcdb clinical-ml
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Dec 3, 2025 - Python
A toolkit for evaluating and monitoring AI models in clinical settings
machine-learning deep-learning evaluation healthcare physionet mimic-iii electronic-health-record clinical-research eicu-crd clinical-data clinical-decision-support drift-detection model-monitoring data-drift omop-cdm mimic-iv electronic-medical-record
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Mar 2, 2026 - Python
Multimodal Machine Learning-based Knee Osteoarthritis Progression Prediction from Plain Radiographs and Clinical Data
medicine deep-learning reproducible-research pytorch radiology clinical-data clinical-decision-support osteoarthritis disease-progression
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Jan 3, 2022 - Python
Toolbox for biostatistics and clinical data analysis in R. Developed by the biostatistics team at Laboratorios Sophia S.A. de C.V.
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Mar 6, 2026 - R
A web application to find patients, build cohorts and visualize health records
query data-visualization medical fhir visualize-data medtech clinical-data cohorts omop cohort-analysis cohort-selection fhir-api cohort-studies omop-cdm cohort-data find-patients
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Mar 3, 2026 - TypeScript
Aggregate and analyse clinical trials data from public registers
cran r database mongodb register sqlite postgresql rstats clinical-trials r-package trial studies clinical-research clinical-data clinical-studies ctgov nodbi duckdb
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Mar 7, 2026 - R
Traditional Chinese Medicine Clinical Records Classification. In BIBM 2016
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Nov 30, 2019 - Java
General tutorials for the setup and use of MedCAT.
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May 22, 2025 - HTML
PPSNet: Leveraging Near-Field Lighting for Monocular Depth Estimation from Endoscopy Videos (ECCV, 2024)
depth transfer-learning knowledge-distillation photometric depth-estimation clinical-data depth-refinement endoscopy sim2real inverse-rendering monocular-depth-estimation endoscopic-vision near-field endoscopy-video
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Dec 29, 2025 - Python
[NeurIPS 2022] Code for "Retrieve, Reason, and Refine: Generating Accurate and Faithful Discharge/Patient Instructions"
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Jul 28, 2024 - Jupyter Notebook
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