Dark Mode

Skip to content

Navigation Menu

Sign in
Appearance settings

Search code, repositories, users, issues, pull requests...

Provide feedback

We read every piece of feedback, and take your input very seriously.

Saved searches

Use saved searches to filter your results more quickly
Sign up
Appearance settings

Pull requests: nf-core/sarek

Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or | + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Assignee
Filter by who's assigned
Assigned to nobody Loading
Sort

Pull requests list

Revise ASCAT resource generation instructions
#2135 opened Feb 10, 2026 by CharlesARoy Loading...
2 tasks done
3.9.0
[DRAFT] Feature/ploidy support
#2091 opened Jan 12, 2026 by zhliUU * Draft
4 of 15 tasks
Output syntax Migration
#2066 opened Dec 3, 2025 by edmundmiller * Draft
11 tasks
Investigating potential mutect2 filter bug
#2062 opened Nov 27, 2025 by maxulysse Loading...
11 tasks
update cnvkit to reflect bug fixes blocked
#2051 opened Nov 11, 2025 by bounlu Loading...
Add mutect2 force calling using '--alleles' flag
#1952 opened Aug 11, 2025 by jchchiu Loading...
8 of 11 tasks
Make lane Column Optional in Samplesheet
#1943 opened Jul 21, 2025 by animesh Loading...
POC: Usage for nf-core/references in nf-core/sarek
#1783 opened Jan 27, 2025 by maxulysse Loading...
11 tasks
Add files via upload - Posters using Sarek
#1773 opened Jan 15, 2025 by mlfalco-bioinfo Loading...
11 tasks
feat: Add linting of FASTQ with FQ/LINT
#1763 opened Dec 17, 2024 by adamrtalbot Loading...
11 tasks
3.9.0
WIP Internal Benchmarking
#1721 opened Nov 1, 2024 by famosab * Draft
11 tasks
Support for PureCN
#1710 opened Oct 29, 2024 by lbeltrame * Draft
3 of 14 tasks
Add full test report
#1701 opened Oct 28, 2024 by edmundmiller * Draft
11 tasks
[DRAFT] Add telseq "a software that estimates telomere length "
#1665 opened Sep 26, 2024 by lindenb Loading...
6 of 11 tasks
Add deepsomatic tool
#1647 opened Sep 10, 2024 by vaxyzek Loading...
11 tasks
Asmultipcf implementation for multi-sample ASCAT CNV calling
#1646 opened Sep 4, 2024 by alexanderchang1 Loading...
8 tasks done
add_dysgu_sarek
#1590 opened Jul 11, 2024 by poddarharsh15 Loading...
11 tasks
vardictjava variant calling workflow
#1582 opened Jul 3, 2024 by eolaniru Loading...
11 tasks
Added Minimap2 alignment
#1486 opened Apr 25, 2024 by EgorGuga Loading...
8 of 10 tasks
Previous 1 2 Next
Previous Next
ProTip! Find all pull requests that aren't related to any open issues with -linked:issue.