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1. Pan_TE Pan_TE Public

   PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes

   Perl 24 1

2. Genome-Wide-Annotation-Pipeline Genome-Wide-Annotation-Pipeline Public

   This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.

   Perl 29 4

3. TE_simu TE_simu Public

   A simulation framework for transposable element (TE) dynamics in genomes. It generates synthetic genomes, models TE insertions, simulates mutations over time, and visualizes results. Includes paral...

   Python 3