Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as differential compartment and chromatin interaction analyses.
snakemake tad loop hi-c hic hicexplorer compartments selfish snakemake-pipeline dchic stripenn genova
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Updated
Mar 5, 2025 - Python