Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
A Modular and Web-Based Tool for Phylogenetic Analysis
Tool for estimating the Felsenstein bootstrap support of phylogenetic trees
R htmlwidget for Jellyfish
a tool for automatic construction of molecular data matrix for phylogenetic inference based on GenBank records
Jellyfish plots for integrative visualization of spatio-temporal tumor evolution and clonal dynamics
A comparative annotation toolkit (CAT) pipeline for 301 Drosophila genomes.
Phylogenetic Inference and Data Visualization for Sequence-Based Typing Methods
An R package to prepare data for phylogenetic analysis
Genomic Epidemiology of SARS-CoV-2 in Pakistan
GRAPPA: Genome Rearrangements Analysis under Parsimony and other Phylogenetic Algorithms
FUSE-PhyloTree enables to identify sequence conservation modules and associate them with functional annotations through phylogenomic analysis.
This tool provides a modular WDL-Docker-Cromwell environment for rMAP, a bioinformatics pipeline for analyzing microbial genomic data, genome assembly & profiling of the resistome, mobilome & virulome, as well as pangenome & MLST typing, BLASTn & phylogenetic analysis. It includes all required tools, enabling reproducible & scalable analysis
A Framework for Large Scale Phylogenetic Analysis
An in vivo PRA reveals intronic motifs that combinatorially regulate splicing in a tissue-biased manner.
A phylogenetically-aware framework for detecting evolutionary associations between binary traits
Morphy releases are archived here. This project serves as the root folder for all of the source projects in Morphy.
Add a description, image, and links to the phylogenetic-analysis topic page so that developers can more easily learn about it.
To associate your repository with the phylogenetic-analysis topic, visit your repo's landing page and select "manage topics."