Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
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Feb 19, 2026 - Python
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motion-correction
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Preprocessing of diffusion MRI
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Mar 6, 2026 - Python
Matlab routines for online non-rigid motion correction of calcium imaging data
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May 29, 2022 - MATLAB
Compressed Sensing and Motion Correction LAB: An MR acquisition and reconstruction system
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Jul 27, 2023 - MATLAB
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
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Nov 14, 2024 - MATLAB
A table containing imaging analysis tools for biology, with a focus on calcium imaging.
neuroscience imaging-informatics calcium-imaging motion-correction imaging neuroscience-methods signal-extraction imaging-analysis
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Sep 15, 2023
FALCON is a Python-based software application designed to facilitate PET motion correction, both for head and total-body scans. Our program is built around the fast 'greedy' registration toolkit, which serves as the registration engine. With FALCON, users can enjoy a streamlined experience for implementing motion correction.
falcon motion-correction pet-imaging data-driven-pet-motion-correction brain-pet-motion-correction total-body-pet-motion-correction
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Dec 2, 2025 - Python
Hands-on examples for motion estimation and correction in MRI
machine-learning deep-learning artificial-intelligence mri motion-correction image-registration motion-estimation
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Aug 30, 2024 - MATLAB
Flow-Registration toolbox for 2P motion compensation
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Sep 16, 2025 - MATLAB
Quantitative MRI toolbox in Python
mri segmentation quantitative nifti motion-correction fsl diffusion-mri ants cbf relaxometry quantitative-susceptibility-mapping mrtrix3 field-mapping magnetization-transfer
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Dec 19, 2024 - Python
A U-Net based end-to-end MRI motion correction. With/Without GAN version is available.
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Sep 13, 2021 - Python
Free-breathing myocardial T1 mapping with Physically-Constrained Motion Correction
deep-learning mri registration alignment motion-correction cardiac model-based t1-mapping myocardial physically-constrained
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Feb 21, 2025 - Python
3D motion correction and motion analysis for microscopy videos
motion neuroimaging optical-flow motion-correction microscopy 3d volumetric-data 2-photon neuroimaging-analysis volumetric-video
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Feb 24, 2026 - Python
Figures for MERLIN paper and demo of pymerlin
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Dec 21, 2021 - Jupyter Notebook
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Dec 12, 2024 - Java
Retrospective MRI reconstruction pipeline incorporating motion correction module
python image-reconstruction pytorch mri mri-images motion-correction cupy grappa motion-compensation gridding mri-reconstruction mri-brain nufft
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Dec 9, 2025 - Python
Suite of Python programs used for 1- and 2-photon calcium imaging analysis
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Nov 18, 2025 - Python
PKGBUILD of CaImAn for Archlinux
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Nov 2, 2017 - Shell
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