New computational framework to process and analyze KAS-seq and spKAS-seq data.

• Updated Dec 5, 2023
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PARE: a computational method to Predict Active Regulatory Elements

• Updated Aug 8, 2025
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ChIP-seq analysis pipeline

• Updated Aug 15, 2024
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ChiP-seq and DNase-seq ,Bulk RNA-seq,scRNA-seq processing pipeline via R and shell

• Updated Feb 9, 2026
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optimized protocol for processing 50-bp SE ChIP-seq

• Updated Sep 27, 2017
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This repo contains additional resources for the maxATAC Python package.

• Updated Nov 29, 2022
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chip-seq pipelines for the Renlab

• Updated Sep 11, 2020
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One-stop shop for one-click NGS analyses from the command-line

• Updated Oct 12, 2017
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Basic ChIPseq pipeline, from downloading FASTQ files to calling ChIP peaks. Coded in bash and Perl

• Updated Jun 25, 2020
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• Updated Jun 24, 2022
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enabling pathway analysis of curated chip-seq data

• Updated Jul 10, 2020
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Pipeline for ChIP-Seq analsysis

• Updated Jul 23, 2021
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Pipeline for analysing and calibrating ChIP-seq data with spike-in genome.

• Updated Dec 20, 2022
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Language agnostic RESTful data access to ReMap data over HTTP

• Updated Mar 30, 2021
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Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing

• Updated Mar 13, 2023
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Program to analyse ChIP-seq and RNA-seq data - Final Project Bioinformatics Subject from Biochemistry Degree (University of Sevilla) 2017

• Updated Mar 29, 2019
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Chip-Seq analysis

• Updated Feb 28, 2020
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MapRRCon analytic package

• Updated Apr 15, 2022
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Demo dataset & usage for HiC-Bench ChIP-Seq pipeline

• Updated Jul 31, 2017
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Simple pipeline for processing of sequencing data from thCHART, ChIP-seq, APEX-ChIP and similar experiments

• Updated Sep 16, 2021
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