[JBHI] Code for our paper "Multi-scale Guided Attention for Medical Image Segmentation"
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May 16, 2020 - Python
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biomedical-image-analysis
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Fully automatic brain tumour segmentation using Deep 3-D convolutional neural networks
deep-learning artificial-intelligence ensemble-learning segmentation brats medical-image-analysis deep-convolutional-neural-networks brain-segmentation brain-tumor brain-tumor-segmentation biomedical-image-analysis
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Aug 1, 2023 - Python
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
tensorflow keras medical-imaging imagenet image-recognition convolutional-neural-networks inception chest-xray-images medical-image-computing inceptionv3 image-detection deep-convolutional-networks biomedical-image-processing keras-tensorflow medical-image-processing medical-application medical-image-analysis biomedical-applications biomedical-image-analysis pneumonia-detection
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Dec 16, 2018 - Jupyter Notebook
Cancer Detection from Microscopic Images by Fine-tuning Pre-trained Models ("Inception") for new class labels
deep-learning keras medical-imaging image-classification image-recognition medical-image-computing convolutional-neural-network biomedical-image-processing keras-tensorflow medical-image-processing medical-application cancer-detection medical-image-analysis biomedical-applications nasnet-models nasnet biomedical-image-analysis microscopic-images nasnetmobile
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Jun 4, 2020 - Jupyter Notebook
causalimages: An R package for performing causal inference with image and image sequence data [PMLR 2023, 2025]
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Dec 30, 2025 - R
An example of easytorch implementation on retinal vessel segmentation.
transfer-learning vessel-segmentation u-net biomedical-image-analysis retinal-vessel-segmentation k-fold-cross-validation easy-neural-network-experiments pool-image-datasets u-net-pytorch pytorch-k-fold-cross-validation
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Jan 23, 2023 - Python
Fully automatic brain tumor segmentation using the Modified 3DUNet architecture for Brats 2020 Challenge.
deep-learning medical-image-analysis brain-tumor-segmentation unet-3d biomedical-image-analysis brats-challenge
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Jun 29, 2021 - Jupyter Notebook
Handling whole-slide images with region-level annotations.
python-library biomedical-image-processing whole-slide-imaging virtual-slide biomedical-image-analysis
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Jan 14, 2019 - Jupyter Notebook
H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net
deep-learning whole-slide-imaging computational-pathology biomedical-image-analysis pathology-image nuclei-segmentation pathomics hover-net he-staining
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Jul 30, 2024 - Python
Code for brain tumor segmentaion
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Nov 16, 2020 - Jupyter Notebook
causalimages: An R package for performing causal inference with image and image sequence data
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Jul 21, 2025 - R
sMRI based depression classification using 3D volumetric convolutional networks
ai deep-learning neuroscience artificial-intelligence classification convolutional-neural-networks biomedical-image-analysis ai-in-medicine depression-analysis
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Aug 30, 2018 - Python
This repository contains all the image processing algorithms studied in discipline "Imagens Biomedicas" of Biomedical Engineering course at UNIFESP in the first semester of 2017. All the algorithms are written in both MatLab and Python Languages.
matlab image-processing python3 medical-imaging biomedical-image-processing biomedical-engineering medical-image-processing processamento-de-imagens unifesp biomedical-image-analysis processamento-digital-imagens processamento-digital-de-sinais engenharia-biomedica
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Mar 3, 2020 - MATLAB
My assignments and projects concerned with Biomedical Engineering
biomedical-informatics software-engineering biomedical-image-processing biomedical-engineering biomedical-data-science biomedical-image-analysis biomedical-research
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Aug 9, 2024 - TeX
Official implementation of "PanopMamba: Vision State Space Modeling for Nuclei Panoptic Segmentation".
nucleus-segmentation computational-pathology medical-image-segmentation panoptic-segmentation biomedical-image-analysis pixel-decoder nuclei-segmentation boundary-segmentation biomedical-image-segmentation imbalanced-classes feature-fusion-network monusac-challenge panoptic-quality small-object-segmentation histopathology-image-analysis histological-image-segmentation microscopy-image-analysis mamba-state-space-models mamba-image-segmentation mamba-vision
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Jan 27, 2026 - Python
An entry to the ISBI 2021 Cell Tracking Challenge that uses a Mask R-CNN neural network to detect and segment cells in 2D and 3D microscopy
machine-learning bioinformatics computer-vision deep-learning convolutional-neural-networks image-segmentation biomedical-image-processing cell-segmentation biomedical-image-analysis
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Aug 8, 2022 - Jupyter Notebook
Biomedical Image Analysis with TensorFlow and DLTK
tensorflow tensorflow-experiments biomedical-image-processing tensorflow-models biomedical-engineering dltk tensorflow-lite biomedical-image-analysis biomedical-signal-processing tensorflow-mri
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Apr 15, 2020 - Python
Modified MobileNet-ShuffleNet-GhostNet Network for Lightweight Retinal Vessel Segmentation
pytorch image-segmentation biomedical-image-processing biomedical-engineering medical-image-segmentation biomedical-image-analysis
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Jan 4, 2024 - Python
This repository contains all the algorithms studied in discipline "Calculo Numerico" of Biomedical Engineering course at UNIFESP in the second semester of 2018.
numerical-methods numerical-integration biomedical-image-processing biomedical-engineering numerical-algorithms unifesp calculo-numerico biomedical-data-science biomedical-applications biomedical-image-analysis biomedical-signal-processing engenharia-biomedica
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Mar 3, 2020 - MATLAB
Malaria Detection from Cell Images using Deep Learning - NasNetMobile Model
machine-learning deep-neural-networks computer-vision deep-learning medical-imaging image-classification image-recognition medical-image-computing convolutional-neural-network biomedical-image-processing medical-image-processing medical-application medical-image-analysis biomedical-applications nasnet biomedical-image-analysis nasnetmobile
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Apr 13, 2020 - Jupyter Notebook
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