ProCyon: A multimodal foundation model for protein phenotypes
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Nov 25, 2025 - Python
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biomedical-ai
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The BioContextAI Registry for biomedical MCP servers
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Mar 17, 2026 - Python
BioContextAI Knowledgebase MCP server for biomedical agentic AI
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Jan 12, 2026 - Python
Cookiecutter template for MCP server development with FastMCP
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Nov 15, 2025 - Python
This repository contains a deep learning-based cancer type prediction system using a trained convolutional neural network (CNN). The model is deployed using Streamlit, allowing users to upload medical images and receive predictions with a probability distribution displayed in a pie chart.
machine-learning tensorflow medical-imaging neural-networks image-classification lung-cancer-detection pyradiomics lidc-dataset lung-cancer-classification histopathology streamlit cancer-classification biomedical-ai ai-in-healthcare-and-biology
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Mar 19, 2026 - Jupyter Notebook
Biomedical Artificial Intelligence
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May 3, 2024 - HTML
Lightweight CNN with Attention for Heart Sound Classification
python deep-learning signal-processing cnn healthcare classification pcg attention-mechanism heart-sound biomedical-ai
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Jul 23, 2025 - Jupyter Notebook
This project builds machine learning models to automatically detect and classify protein complexes in cryo-electron tomography (cryoET) images, enabling scalable analysis of cellular structures and supporting advanced biological and medical research.
bioinformatics deep-learning image-processing pytorch medical-imaging scientific-computing yolo protein-identification 3d-object-detection cryoet biomedical-ai 3d-image-analysis cryo-electron-tomography 3d-yolo
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Nov 24, 2025 - Jupyter Notebook
Lab website
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Mar 17, 2026 - HTML
Web-based semi-automated retinal fluid segmentation tool for OCT images. Combines traditional image processing with deep learning models (U-Net, MedSAM) to help medical professionals efficiently annotate and segment retinal fluid regions. Features interactive annotation tools, multiple segmentation algorithms, and user-friendly web interface.
opencv django computer-vision deep-learning image-annotation pytorch web-application image-segmentation annotation-tool medical-image-processing u-net retinal-segmentation biomedical-ai medsam oct-imaging
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Jul 10, 2025 - CSS
RAGnosis -- An AI-powered clinical reasoning assistant that retrieves real diagnostic notes (from MIMIC-IV-Ext-DiReCT) and generates explainable medical insights using Mistral-7B & FAISS, wrapped in a clean Gradio UI. GPU-ready, explainable, and open-source.
nlp ai deep-learning transformers pytorch healthcare gradio mistral explainable-ai faiss rag huggingface medical-diagnosis mimic-iv llm clinical-reasoning retrieval-augmented-generation biomedical-ai medical-diagnosis-ai retrieval-augmented-generation-rag
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Jul 12, 2025 - Jupyter Notebook
Deep learning system that interprets brain signals from EEG/fMRI to control devices, predict neurological disorders, and enable brain-computer interfaces.
deep-learning signal-processing deep-learning-algorithms brain-computer-interface signal-processing-algorithms deep-learning-framework signal-processing-on-graphs neural-decoding biomedical-ai healthcare-technology healthcare-technology-solutions brain-computer-interface-classification
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Nov 7, 2025 - Python
This repository contains a deep learning-based cancer type prediction system using a trained convolutional neural network (CNN). The model is deployed using Streamlit, allowing users to upload medical images and receive predictions with a probability distribution displayed in a pie chart.
machine-learning tensorflow medical-imaging neural-networks image-classification deeplearning lung-cancer-classification histopathology streamlit cancer-classification biomedical-ai ai-in-healthcare-and-biology
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Mar 23, 2025 - Jupyter Notebook
Masters Thesis: Deep Learning Based Heart Sound Classification using Multimodal Features (PyTorch)
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Feb 17, 2026 - Python
Face-aware adaptation of self-supervised motion magnification for micro-expression spotting on CASME II.
computer-vision deep-learning pytorch affective-computing micro-expression motion-magnification neural-engineering biomedical-ai
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Mar 8, 2026 - Python
Research archive on Deep Learning and CNN applications in automated radiographic assessment (2020)
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Feb 22, 2026
Improving diagnostic confidence in histopathology through fine-tuned vision models and interpretable slide-level inference tools.
machine-learning computer-vision deep-learning pytorch medical-imaging resnet digital-pathology self-supervised-learning histopathology streamlit vision-transformer colorectal-cancer biomedical-ai
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Nov 26, 2025 - Python
Exploring classical vs. quantum ML for Parkinson's diagnosis using Qiskit, PennyLane, and IBM Quantum hardware. Hackathon 2nd place project.
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Jan 1, 2026 - Jupyter Notebook
Production-grade model registry for the OmniBioAI ecosystem, providing versioning, integrity verification, provenance tracking, and lifecycle management of AI/ML models across local, cloud, and HPC environments.
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Mar 19, 2026 - Python
Genomic RAG system integrating PubMed, vector search, and LLMs to extract structured, citation-based clinical insights.
nlp machine-learning bioinformatics ai genomics pubmed rag llm chromadb retrieval-augmented-generation biomedical-ai
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Mar 3, 2026 - Python
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