image-analysis
Examples illustrating basic stages of analyzing calcium imaging data
Requirements
We will use the TIFFStack class to load image stacks, which can be found on GitHub:
https://github.com/DylanMuir/TIFFStack
Contents
- RoiMaker - A simple class that makes a GUI to interactively place elliptical ROIs on an image
- dftregister - Calculates x/y frame translation to remove motion artifacts
- shiftframe - Fast method for applying frame translations
- image_analysis_pipeline - example basic image analysis pipeline