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telatin
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Andrea Telatin telatin

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telatin/README.md

Hello!

I'm a bioinformatician working on microbial (meta)genomics :DNA:

I like tinkering with nextflow:

Some tools are available via Bioconda :

seqfu bamtocov dadaist2 qax
Fast toolkit for FASTX manipulation and inspection to extract coverage tracks from BAM files to analyze 16s/ITS from reads to R utilities for Qiime2 artifacts

I use GitHub also for training material

microbiome bioinformatics Personal website bash training Companion videos
Some tutorials A small blog Toy files to practice Bash A Youtube channel

I'm using Mastodon

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  1. seqfu2 seqfu2 Public

    seqfu - Sequece Fastx Utilities

    Nim 126 9

  2. covtobed covtobed Public

    covtobed | Convert the coverage track from a BAM file into a BED file

    Makefile 44 3

  3. bamtocov bamtocov Public

    coverage extraction from BAM/CRAM files, supporting targets

    Nim 65 7

  4. gan gan Public

    the Great Automatic Nomenclator -- The Next Million Names for Archaea and Bacteria

    Python 41 6

  5. learn_bash learn_bash Public

    Toy files and training material to introduce Linux to molecular biologists

    Python 22 4

  6. nextflow-example nextflow-example Public

    A simple DSL2 workflow: tutorial

    Nextflow 26 8