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1. DeepLIIF DeepLIIF Public

   Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

   Python 239 87

2. CEP CEP Public

   Computational Endoscopy Platform (advanced deep learning toolset for analyzing endoscopy videos) [MICCAI'25, MICCAI'22, MICCAI'21, ISBI'21, CVPR'20]

   Python 82 11

3. Physics-ArX Physics-ArX Public

   Physics-based data augmentation library for quantifying CT and CBCT images in radiotherapy [PMB'23, PMB'21, Medical Physics'21, AAPM'21]

   Python 71 18

4. DoseRTX DoseRTX Public

   Domain knowledge driven 3D radiation dose prediction [PMB'22]

   Python 51 11

5. ImPartial ImPartial Public

   Interactive deep learning whole-cell segmentation and thresholding using partial annotations

   Jupyter Notebook 42 3

6. smprofiler smprofiler Public

   Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironment (https://smprofiler.io)

   Python 23 2

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