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1. awesome-cell-cell-communication awesome-cell-cell-communication Public

   Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics

   Jupyter Notebook 59 8

2. ZJUFanLab/scDeepSort ZJUFanLab/scDeepSort Public

   Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network

   Python 107 20

3. miRTalk miRTalk Public

   Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data

   HTML 17 4

4. ZJUFanLab/CellTalkDB ZJUFanLab/CellTalkDB Public

   A manually curated database of literature-supported ligand-receptor interactions in human and mouse

   R 34 5

5. scCrossTalk scCrossTalk Public

   Infer and visualize cell-cell communication for single-cell RNA-seq data

   HTML 7 1

6. ZJUFanLab/SpaTalk ZJUFanLab/SpaTalk Public

   Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

   R 75 20