phylopomp, an R package for POMP inference on genealogies
Publications
"Exact Phylodynamic Likelihood via Structured Markov Genealogy Processes" (arXiv:2405.17032, 2024)
"Markov Genealogy Processes" (Theoretical Population Biology
143:77-91, 2022)
Related packages:
Checklist for adding a new model
- create and edit
yaml/.yml - in
yaml/, runRscript add_model.R -
cp yaml/src/* src -
cp yaml/R/* R - optionally edit
R/and.R src/for style and documentation.cc - add examples to
examples/ - add tests to
tests/