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Data, Knowledge, and Web Engineering

Internal GitHub repositories of DKW Group at Aalborg University, Denmark.

Hi there

This is the DKW github organization.

Our research group repositories are stored here.

Repository list by project/person

The following are a list of repositories. This list is intended to help people figure what is going on in the department and what could be of interest to them. So, if you create a new repository or a new project, please update the information on this README as well. Thank you!

General

Medical Analytics

This project is concerned with developing analytic techniques over medical data.

  • Medic Transformers M-BERT Model for Solving Dowstream Medical Tasks using EHR Sequence Data for Transformer models.
  • Patient Graph Feature Inititalization Experimental Pre-initializing Node Features of an EHR Graph Using Auxiliary Domain Hierarchies
  • MIMIC for AIIM MIMIC data experiments for AIM publication: Assigning diagnosis codes from medication history
  • Alert LPR LPR experiments for AIM publication: Assigning diagnosis codes from medication history
  • MIMIC Demo for ALERT MIMIC data experiments for AIME publication: Towards assigning diagnosis codes from medication history.

RDF Indexes

SPARQL Provenance

SHACL shapes extraction, KG to PG Transformation, and SPARQL query optimization

RDF/SPARQL-star

Data Integration

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  1. qse qse Public

    Quality Shapes Extraction from very large Knowledge Graphs

    Java 12 2

  2. medic_transformer medic_transformer Public

    Experimental code for using transformer models on patient event sequences

    Python 3

  3. KG2PG KG2PG Public

    Project for converting KGs to PGs using SHACL shapes schema and PG-Schemas.

    Java 3

  4. Lothbrok-Java Lothbrok-Java Public

    Repository for the Lothbrok implementation

    Java 2

  5. demo-shactor demo-shactor Public

    SHACTOR: Improving the Quality of Large-Scale Knowledge Graphs with Validating Shapes

    Java 2

  6. Influence_Function_Evaluation Influence_Function_Evaluation Public

    Repository of applying influence function explainability method to a weak supervision pipeline

    Jupyter Notebook 1

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