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BioCore, NTNU

The Bioinformatics core facility at NTNU

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  1. epic2 epic2 Public

    Ultraperformant reimplementation of SICER

    Cython 59 10

  2. snpflip snpflip Public archive

    Report reverse and ambiguous strand SNPs in GWAS data

    Python 34 8

  3. epic epic Public

    (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

    Python 31 6

  4. kerneltree kerneltree Public

    Forked from markfasheh/interval-tree

    Ultrafast interval trees from the kernel. Deprecated in favor of the NCLS.

    C 26 2

  5. chip_seq_pipeline chip_seq_pipeline Public

    ChIP-Seq Analysis Pipeline with emphasis on differential expression

    Python 9

  6. hisat2_index hisat2_index Public

    Python

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