https://doi.org/10.1038/s41598-022-13377-w

MAXWELL (Microscopy by Achromatic X-rays With Emission of Laminar Light) is a tandem use X-ray/visible light microscopy technique designed and implemented at BL29XU at the RIKEN SPring-8 Center, Japan. This repository contains several scripts, primarily in Python and Java, which are intended to be used for experimentation and analysis on output from the MAXWELL microscopy system.

• Download MAXWELL_MultiDimensionalRename.py from Github
• Open python command line
• cd into the folder containing the downloaded file
• Type "python" to open the python environment
• Type the following then click enter:
  • from MAXWELL_MultiDimensionalRename import Rename
• Type the following then click enter: (The path should be the path to your stack. It is important to include the r outside of the quotation marks)
  • a = Rename(r"C:\Users\User\Desktop\Folder")
• Type the following then click enter: (Please change the name and numbers to reflect the data)
  • a.Execute(sample_name="YourSample", deg=0, Z_Num=10, X_Num=31)

Finished. Check the folder to ensure the name was changed correctly.

• Download MAXWELL_StructuredStack.ijm from Github
• (In ImageJ) File Import Image Sequence Select your data
• Plugins Macros Run Select MAXWELL_StructuredStack.ijm
• Imput all information from your stack

Finished. Check the data.

MAXWELL Software developed by Sierra Dean @ RIKEN SPring-8 Center (JAPAN) 2024
Email: ccnd@live.com