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Public Health Bioinformatics

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  1. pubmlst_client pubmlst_client Public

    List and download schemes from pubMLST.org and other BIGSDB servers

    Python 10 5

  2. kipper kipper Public

    command line versioning tool for large key-value text files

    Python 6 2

  3. flu_classification_suite flu_classification_suite Public

    Flu Classification Suite

    Python 5 1

  4. galaxy-tool-tutorials galaxy-tool-tutorials Public

    Galaxy tool training materials being developed for in-house workshops.

    4

  5. ontofetch ontofetch Public

    Ontofetch is a command line tool to fetch branches of terms from a given local file or internet based ontology URL. This is output in JSON format, and includes term label, definition, broad, narrow...

    Python 3 3

  6. irida-plugin-snippy-phylogenomics irida-plugin-snippy-phylogenomics Public

    Call core SNPs agains a reference genome for a set of bacterial isolates, and build a phylogenetic tree based on the core-genome SNP information.

    Java 2 1

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