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High-Performance Computing at the NIH

Repositories for tools developed by the NIH HPC staff. These tools are made available here as a courtesy, without any guarantee of support

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  1. swarm swarm Public

    Swarm is a script designed to simplify submitting a group of commands to the Biowulf cluster.

    Perl 8 7

  2. python-in-hpc python-in-hpc Public

    Materials for a Python in HPC class

    Jupyter Notebook 34 9

  3. singularity-examples singularity-examples Public

    example singularity definition files and demos

    Shell 28 12

  4. snakemake-class snakemake-class Public

    Class materials for the NIH HPC snakemake class

    Python 15 10

  5. Singularity-Tutorial Singularity-Tutorial Public

    Forked from Singularity-tutorial/Singularity-tutorial.github.io

    How to use Singularity!

    68 19

  6. singularity-def-files singularity-def-files Public

    definition files and wrapper scripts used by NIH HPC staff to install user-facing apps on the Biowulf cluster

    Shell 33 5

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