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SIX5

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
SIX5
Identifiers
AliasesSIX5, BOR2, DMAHP, SIX homeobox 5
External IDsOMIM: 600963; MGI: 106220; HomoloGene: 72248; GeneCards: SIX5; OMA:SIX5 - orthologs
Gene location (Human)
Chr.Chromosome 19 (human)[1]
Band19q13.32Start45,764,785 bp[1]
End45,769,252 bp[1]
Gene location (Mouse)
Chr.Chromosome 7 (mouse)[2]
Band7 A3|7 9.46 cMStart18,828,519 bp[2]
End18,832,474 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • cardiac muscle tissue of right atrium

  • right uterine tube

  • right ovary

  • myocardium of left ventricle

  • left ovary

  • parotid gland

  • canal of the cervix

  • right coronary artery

  • left uterine tube

  • body of uterus
Top expressed in
  • ascending aorta

  • genital tubercle

  • aortic valve

  • corneal stroma

  • tail of embryo

  • cardiac muscle tissue of left ventricle

  • ventricular zone

  • molar

  • Gonadal ridge

  • male urethra
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

147912

20475

Ensembl

ENSG00000177045

ENSMUSG00000040841

UniProt

Q8N196

P70178

RefSeq (mRNA)

NM_175875

NM_011383

RefSeq (protein)

NP_787071

NP_035513

Location (UCSC)Chr 19: 45.76 - 45.77 MbChr 7: 18.83 - 18.83 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Homeobox protein SIX5 is a protein that in humans is encoded by the SIX5 gene.[5][6]

References

[edit]
  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000177045 - Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000040841 - Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Boucher CA, King SK, Carey N, Krahe R, Winchester CL, Rahman S, Creavin T, Meghji P, Bailey ME, Chartier FL (Apr 1996). "A novel homeodomain-encoding gene is associated with a large CpG island interrupted by the myotonic dystrophy unstable (CTG)n repeat". Hum Mol Genet. 4 (10): 1919-25. doi:10.1093/hmg/4.10.1919. PMID 8595416.
  6. ^ "Entrez Gene: SIX5 sine oculis homeobox homolog 5 (Drosophila)".

Further reading

[edit]
[edit]
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) b-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous


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